Oligonucleotide array sequence analysis /
副标题：无
作 者：Martina K. Moretti and Lorenzo J. Rizzo, editors.
分类号：
ISBN：9781604565423
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简介
Summary:
Publisher Summary 1
Editors Moretti and Rizzo (no affiliations listed) have collected research in the field on the use of oligonucleotides for detecting complementary DNA and RNA such as in DNA microarrays and the synthesis of artificial genes. Written for students and genetic researchers that employ DNA analysis for forensic science, this volume covers such topics as proper platforms for DNA microarray experiments, statistical analyses of tiling-path microarrays and clustering time-series gene expression data. Expert commentaries are also included on oligonucleotide microarray hybridization and visible haplotype-tagSNP typing array devices. Annotation 漏2009 Book News, Inc., Portland, OR (booknews.com)
目录
Preface p. ix
Expert Commentaries p. 1
Visible Haplotype-tagSNP Typing Array Device for Human Radiation Sensitivity-Associated Genes Yuichi Michikawa and Tomo Suga and Atsuko Ishikawa and Yoshimi Ohtsuka and Mayumi Iwakawa and Takashi Imai p. 3
Specificity of Oligonucleotide Microarray Hybridization: Effectors and Their Effects Hinanit Koltai and Carmiya Weingarten-Baror p. 15
Research and Review Studies p. 25
Chapter 1 Selecting a Proper Platform for Microarray Experiment Sergey V. Anisimov p. 27
Chapter 2 The Clinical Relevance of Gene Expression Profiles in Peripheral Blood Mononuclear Cells Christopher H. Woelk and Michael E. Burczynski p. 37
Chapter 3 Clustering Time-Series Gene Expression Data Luis Rueda and Ataul Bari p. 83
Chapter 4 Recent Advances in Microbial Discovery Using Metagenomics, DNA Microarray, Biosensors, Molecular Subtyping, and Phage Recombinant Probes Sufian F. Al-Khaldi and Magdi M. Mossoba and Betsy Jean Yakes and Eric Brown and Devang Sharma and Santina Carnazza|p123
Chapter 5 Statistical Analysis of Tiling-Path Microarrays Xiangfeng Wang p. 149
Chapter 6 Application of Microarray in Rat Model of Alcoholic and Nonalcoholic Liver Disease Meena R. Sharma and Mahesh C. Sharma and Amin A. Nanji p. 175
Chapter 7 Biological Interpretation in Oligonucleotide Array Sequence Analysis Based on Molecular Networks Hiromi Sato p. 209
Chapter 8 Generalized Analysis of Variance (ANOVA) Models for Oligonucleotide Microarray Data Analysis Hua Li and Dongxiao Zhu p. 245
Chapter 9 Online Tools for Presentation and Analysis of Plant Microarray Data David Honys and Nikoleta Dupl'akova and David Renak p. 265
Chapter 10 Methods, Strategies and Facts for Improving the Analysis of Genetic Variations Using DNA Arrays Angelica Rangel-Lopez and Alfonso Mendez-Tenorio and Rogelio Maldonado-Rodriguez and Kenneth L. Beattie p. 297
Chapter 11 Improving Detection of Differentially Expressed Genes in Microarrays Using More Efficient Statistics, the Local Optimal Fudge Factor and a Two-Stage FDR Correction Shunpu Zhang p. 323
Chapter 12 Basic Approaches to Gene/Exon Level Data Analysis: 3' IVT and Exon 1.0 ST Microarray Platforms Roberta Bosotti and Raffaele Calogero and Vanessa Marchesi p. 347
Chapter 13 Simultaneous Qualitative and Quantitative Identification of Multiple Targets by Polymerase Chain Reaction on Microarray Natalia V. Zakharova and Alexei L. Drobyshev and Dmitry A. Khodakov and Anna I. Myznikova and Irina A. Gorban p. 367
Chapter 14 Use of Arrays with Non-model Organisms: A UK Perspective Michael J. Allen and Andrew R. Cossins and Neil Hall and Mark Blaxter and Terry Burke and Dawn Field p. 387
Chapter 15 Positional Weight Matrix as a Sequence Motif Detector Youlian Pan and Sieu Phan p. 403
Chapter 16 Quality Control Methods for Oligonucleotide Microarrays Manuel Nieto-Diaz and Wolfgang Pita-Thomas and Rodrigo Martinez-Maza and Manuel Nieto-Sampedro p. 423
Chapter 17 Applications of Qiagen QIAplex Technology in Clinical Multiplex Assays John Brunstein p. 443
Chapter 18 Oncology Applications of Microarray Technology Detecting Small Genomes Variability Rossana Scavelli and Sergio Abrignani and Marco Crimi p. 457
Chapter 19 Oligonucleotide Arrays in Forensic DNA Testing Jason R.E. Shepard p. 469
Index p. 491
Expert Commentaries p. 1
Visible Haplotype-tagSNP Typing Array Device for Human Radiation Sensitivity-Associated Genes Yuichi Michikawa and Tomo Suga and Atsuko Ishikawa and Yoshimi Ohtsuka and Mayumi Iwakawa and Takashi Imai p. 3
Specificity of Oligonucleotide Microarray Hybridization: Effectors and Their Effects Hinanit Koltai and Carmiya Weingarten-Baror p. 15
Research and Review Studies p. 25
Chapter 1 Selecting a Proper Platform for Microarray Experiment Sergey V. Anisimov p. 27
Chapter 2 The Clinical Relevance of Gene Expression Profiles in Peripheral Blood Mononuclear Cells Christopher H. Woelk and Michael E. Burczynski p. 37
Chapter 3 Clustering Time-Series Gene Expression Data Luis Rueda and Ataul Bari p. 83
Chapter 4 Recent Advances in Microbial Discovery Using Metagenomics, DNA Microarray, Biosensors, Molecular Subtyping, and Phage Recombinant Probes Sufian F. Al-Khaldi and Magdi M. Mossoba and Betsy Jean Yakes and Eric Brown and Devang Sharma and Santina Carnazza|p123
Chapter 5 Statistical Analysis of Tiling-Path Microarrays Xiangfeng Wang p. 149
Chapter 6 Application of Microarray in Rat Model of Alcoholic and Nonalcoholic Liver Disease Meena R. Sharma and Mahesh C. Sharma and Amin A. Nanji p. 175
Chapter 7 Biological Interpretation in Oligonucleotide Array Sequence Analysis Based on Molecular Networks Hiromi Sato p. 209
Chapter 8 Generalized Analysis of Variance (ANOVA) Models for Oligonucleotide Microarray Data Analysis Hua Li and Dongxiao Zhu p. 245
Chapter 9 Online Tools for Presentation and Analysis of Plant Microarray Data David Honys and Nikoleta Dupl'akova and David Renak p. 265
Chapter 10 Methods, Strategies and Facts for Improving the Analysis of Genetic Variations Using DNA Arrays Angelica Rangel-Lopez and Alfonso Mendez-Tenorio and Rogelio Maldonado-Rodriguez and Kenneth L. Beattie p. 297
Chapter 11 Improving Detection of Differentially Expressed Genes in Microarrays Using More Efficient Statistics, the Local Optimal Fudge Factor and a Two-Stage FDR Correction Shunpu Zhang p. 323
Chapter 12 Basic Approaches to Gene/Exon Level Data Analysis: 3' IVT and Exon 1.0 ST Microarray Platforms Roberta Bosotti and Raffaele Calogero and Vanessa Marchesi p. 347
Chapter 13 Simultaneous Qualitative and Quantitative Identification of Multiple Targets by Polymerase Chain Reaction on Microarray Natalia V. Zakharova and Alexei L. Drobyshev and Dmitry A. Khodakov and Anna I. Myznikova and Irina A. Gorban p. 367
Chapter 14 Use of Arrays with Non-model Organisms: A UK Perspective Michael J. Allen and Andrew R. Cossins and Neil Hall and Mark Blaxter and Terry Burke and Dawn Field p. 387
Chapter 15 Positional Weight Matrix as a Sequence Motif Detector Youlian Pan and Sieu Phan p. 403
Chapter 16 Quality Control Methods for Oligonucleotide Microarrays Manuel Nieto-Diaz and Wolfgang Pita-Thomas and Rodrigo Martinez-Maza and Manuel Nieto-Sampedro p. 423
Chapter 17 Applications of Qiagen QIAplex Technology in Clinical Multiplex Assays John Brunstein p. 443
Chapter 18 Oncology Applications of Microarray Technology Detecting Small Genomes Variability Rossana Scavelli and Sergio Abrignani and Marco Crimi p. 457
Chapter 19 Oligonucleotide Arrays in Forensic DNA Testing Jason R.E. Shepard p. 469
Index p. 491
Oligonucleotide array sequence analysis /
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