High performance computing and grids in action /

Foreword v
Gerhard R. Joubert
Editor's Preface vii
Lucio Grandinetti
List of Contributors ix
Advancement of the State of the Art in Scientific Software and Infrastructure
Human-Machine Symbiosis, 50 Years On 3
lan Foster
Chapter 1. Systems and Solutions for Advanced Distributed Computing and
for High Performance Computing and Networking
Exploiting Mixed Precision Floating Point Hardware in Scientific Computations 19
Alfi-edo Buttari, Jack Dongarra, Jakub Kurzak, Julie Langou,
Julien Langou, Piotr Luszczek and Stanimire Tomov
A Model for the Design and Programming of Multi-Cores 37
Chris Jesshope
Pegasus and DAGMan from Concept to Execution: Mapping Scientific
Workflows onto Today's Cyberinfrastructure 56
Ewa Deelman, Miron Livny, Gaurang Mehta, Andy Pavlo, Gurmeet Singh,
Mei-Hui Su, Karan Vahi and R. Kent Wenger
Building an Infrastructure for Urgent Computing 75
Pete Beckman, Ivan Beschastnikh, Suman Nadella and Nick Trebon
Network Communication as a Service-Oriented Capability 96
William Johnston, Joe Metzger, Mike 0 'Connor, Michael Collins,
Joseph Burrescia, Eli Dart, Jim Gagliardi, Chin Guok and Kevin Oberman
Chapter 2. Grid Fundamentals
An Infrastructure for the Deployment of e-Science Applications 131
Wojtek James Goscinski and David Abramson
Building e-Science Portals: A Service Oriented Architecture 149
Dennis Gannon, Beth Plale, Marcus Christie, Yi Huang, Scott Jensen,
Ning Litu, Suresh Marru, Sangmi Lee Pallickara, Srinath Perera,
Satoshi Shirisuna, Yogesh Simmhan, Aleksander Slominski, Yiming Sun
and Nithya Vijavakumar
A New Resource Brokering and Scheduling Solution for a Grid Environment 167
Lucio Grandinetti, Maria Carmen Incutti and Francesco Mari
Challenges of Scale: When All Computing Becomes Grid Computing 186
Robert J Fowler, Todd Gamblin, Gopi Kandaswamy, Anirban Mandal,
Allan K Porterfield, Lavanya Ramakrishnan and Daniel A. Reed
Job Scheduling on the Grid: Towards SLA-Based Scheduling 207
Rizos Sakellariou and Viktor Yarmolenko
Chapter 3. Grid Technology
TeraGrid: Analysis of Organization, System Architecture, and Middleware
Enabling New Types of Applications 225
Charlie Catlett, William E. Allcock, Phil Andrews, Ruth Aydt, Ray Bair,
Natasha Balac, Bryan Banister, Trish Barker, Mark Bartelt, Pete Beckman,
Francine Berman, Gary Bertoline, Alan Blatecky, Jay Boisseau,
Jim Bottum, Sharon Brunett, Julian Bunn, Michelle Butler, David Carver,
John Cobb, Tim Cockerill, Peter F. Couvares, Maytal Dahan, Diana Diehl,
Thom Dunning, Ian Foster, Kelly Gaither, Dennis Gannon,
Sebastien Goasguen, Michael Grobe, Dave Hart, Matt Heinzel,
Chris Hempel, Wendy Huntoon, Joseph Insley, Christopher Jordan,
Ivan Judson, Anke Kamrath, Nicholas Karonis, Carl Kesselman,
Patricia Kovatch, Lex Lane, Scott Lathrop, Michael Levine, David Li/ka,
Lee Liming, Miron Livny, Rich Loft, Doru Marcusiu, Jim Marsteller,
Stuart Martin, Scott McCaulay, John McGee, Laura McGinnis,
Michael McRobbie, Paul Messina, Reagan Moore, Richard Moore,
J.P. Navarro, JeffNichols, Michael E. Papka, Rob Pennington, Greg Pike,
Jim Pool, Raghu Reddy, Dan Reed, Tony Rimovsky, Eric Roberts,
Ralph Roskies, Sergiu Sanielevici, J. Ray Scott, Anurag Shankar,
Mark Sheddon, Mike Showerman, Derek Simmel, Abe Singer, Dane Skow,
Shava Smallen, Warren Smith, Carol Song, Rick Stevens, Craig Stewart,
Robert B. Stock, Nathan Stone, John Towns, Tomislav Urban,
Mike Vildibill, Edward Walker, Von Welch, Nancy Wilkins-Diehr,
Roy Williams, Linda Winkler, Lan Zhao and Ann Zimmerman
Applying the Provenance Data Model to a Bioinformatics Case 250
Paul Groth, Steve Munroe, Simon Miles and Luc Moreau
Cyberinfrastructure and Web 2.0 265
Marlon E. Pierce, Geoffrey Fox, Huapeng Yuan and Yu Deng
BabelPeers: P2P Based Semantic Grid Resource Discovery 288
Dominic Battri, Felix Heine, Andre Hding and Odej Kao
Data Integration Based on Schema-Mapping in Service-Based Grids 308
Carmela Comito and Domenico Talia
Chapter 4. Grids and High Performance Computing in Action
The GRelC Project: State of the Art and Future Directions 331
Sandro Fiore, Massinto Caaro, Maria Mirto, Salvatore Vadacca,
Alessandro Negro and Giovanni Aloisio
Service-Based Access to and Processing of Large Scientific Datasets 345
Umit V. Catalyurek, Sivaramakrishnan Narayanan, Olcay Sertel,
Jun Kong, B. Barla Cambazoglu, Tony Pan, Ashish Sharma,
Shannon Hastings, Stephen Langella, Scott Oster, Tahsin Kurc,
Metin Gurcan and Joel Saltz
A Feature-Rich Workflow Description Language that Supports Resource
Co-Allocations 363
Yonghong Yan and Barbara M. Chapman
Parallelization and Scalability of Multiplayer Online Games via State
Replication 384
Jens Miiller-Iden, Sergei Gorlatch and Tobias Schr6ter
ImageGrid: An Image Processing Grid Based on CGSP 403
Hai Jin, Ran Zheng and Qin Zhang
The EGEE-II Project: Evolution Towards a Permanent European Grid Initiative 424
Owen Appleton, Bob Jones, Dieter Kranzlmrniller and Erwin Laure
Innovative Grid Technologies Applied to Bioinformatics and Hurricane
Mitigation 436
Rosa Badia, Gargi Dasgupta, Onyeka Ezenwoye, Liana Fong,
Howard Ho, Sawsan Khuri, Yanbin Liu, Steve Luis, Anthony Praino,
Jean-Pierre Prost, Ahmed Radwan, Seyed Masoud Sadiadi,
Shivkunmar Shivaji, Balaji Viswanathan, Patrick Welsh and Akmal Younis
Computer Science Grids 463
Franck Cappello and Henri Bal
An e-Marketplace Model for Logistics Services Based on Grid Technology 482
Maria Carmen Incutti and Francesco Mari
Challenges Facing Production Grids 506
Ruth Pordes
Subject Index 523
Author Index 525