Bioinformatics and genomes : current perspectives /
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作 者：edited by Miguel A. Andrade.
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ISBN：9781898486473
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简介
In 12 chapters, bioinformaticists from Europe and Mexico critically review recent developments in the field. Each chapter describes the use and purpose of recently developed applications, and outlines its future prospects for development. Particular attention is paid to multiple alignments methods, the analysis of expression data, structural genomics, and protein structure prediction. An abstract is provided for each chapter, and many include charts, graphs, and diagrams. Distributed by ISBS. Annotation copyrighted by Book News, Inc., Portland, OR
目录
List of Contributors p. vii
Preface p. x
Chapter 1 Predicting Protein Structural Domain Boundaries from Sequence Data Richard A. George and Jens Kleinjung and Jaap Heringa p. 1
Chapter 2 Using Multiple Alignment Methods to Assess the Quality of Genomic Data Analysis Cedric Notredame and Chantal Abergel p. 27
Chapter 3 Analysis of Expression Data Javier Tamames p. 51
Chapter 4 High Rate of Gene Displacement in Vitamin Biosynthesis Pathways Enrique Morett and Gloria Saab-Rincon and Enrique Merino and Peer Bork and Emmanuvel Rajan and Leticia Olvera and Maricela Olvera p. 69
Chapter 5 Prediction of Post-translational Modifications from Amino Acid Sequence: Problems, Pitfalls, Methodological Hints Frank Eisenhaber and Birgit Eisenhaber and Sebastian Maurer-Stroh p. 81
Chapter 6 Automatic Genome Annotation and the Status of Sequence Databases Miguel A. Andrade p. 107
Chapter 7 Dynamics and Complexity in Systems Biology Modelling: Theoretical Challenges in Metabolic Simulation Eric Minch p. 123
Chapter 8 Mapping Words for Genome Data Integration Carolina Perez-Iratxeta and Miguel A. Andrade p. 141
Chapter 9 Structural Genomics and Structural Bioinformatics Patrick Aloy and Baldomero Oliva and Robert B. Russell p. 153
Chapter 10 Role of Mnemonics and Virtual Reality in Visualizing Genomics and Proteomics Data Sean I. O'Donoghue p. 185
Chapter 11 Pseudogenes and Genomes David Torrents and Mikita Suyama and Peer Bork p. 197
Chapter 12 Bioinformatics and Genomes: The Future p. 211
Index p. 219
Preface p. x
Chapter 1 Predicting Protein Structural Domain Boundaries from Sequence Data Richard A. George and Jens Kleinjung and Jaap Heringa p. 1
Chapter 2 Using Multiple Alignment Methods to Assess the Quality of Genomic Data Analysis Cedric Notredame and Chantal Abergel p. 27
Chapter 3 Analysis of Expression Data Javier Tamames p. 51
Chapter 4 High Rate of Gene Displacement in Vitamin Biosynthesis Pathways Enrique Morett and Gloria Saab-Rincon and Enrique Merino and Peer Bork and Emmanuvel Rajan and Leticia Olvera and Maricela Olvera p. 69
Chapter 5 Prediction of Post-translational Modifications from Amino Acid Sequence: Problems, Pitfalls, Methodological Hints Frank Eisenhaber and Birgit Eisenhaber and Sebastian Maurer-Stroh p. 81
Chapter 6 Automatic Genome Annotation and the Status of Sequence Databases Miguel A. Andrade p. 107
Chapter 7 Dynamics and Complexity in Systems Biology Modelling: Theoretical Challenges in Metabolic Simulation Eric Minch p. 123
Chapter 8 Mapping Words for Genome Data Integration Carolina Perez-Iratxeta and Miguel A. Andrade p. 141
Chapter 9 Structural Genomics and Structural Bioinformatics Patrick Aloy and Baldomero Oliva and Robert B. Russell p. 153
Chapter 10 Role of Mnemonics and Virtual Reality in Visualizing Genomics and Proteomics Data Sean I. O'Donoghue p. 185
Chapter 11 Pseudogenes and Genomes David Torrents and Mikita Suyama and Peer Bork p. 197
Chapter 12 Bioinformatics and Genomes: The Future p. 211
Index p. 219
Bioinformatics and genomes : current perspectives /
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